J3_3J9W_040

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAU*AGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_040 not in the Motif Atlas

Homologous match to J3_4WF9_020

Geometric discrepancy: 0.2068

The information below is about J3_4WF9_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

3J9W|1|BA|C|2818
3J9W|1|BA|A|2819
3J9W|1|BA|U|2820
*
3J9W|1|BA|A|2831
3J9W|1|BA|G|2832
3J9W|1|BA|U|2833
3J9W|1|BA|A|2834
3J9W|1|BA|A|2835
3J9W|1|BA|G|2836
*
3J9W|1|BA|C|2914
3J9W|1|BA|G|2915
3J9W|1|BA|A|2916
3J9W|1|BA|G|2917
3J9W|1|BA|G|2918

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein uL3

Chain BV

50S ribosomal protein uL22