J3_3J9W_041

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AC*GAUAUGC*GAUUU

Length

14 nucleotides

Bulged bases

3J9W|1|BA|U|72, 3J9W|1|BA|U|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_041 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.1579

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

3J9W|1|BA|A|56
3J9W|1|BA|C|57
*
3J9W|1|BA|G|70
3J9W|1|BA|A|71
3J9W|1|BA|U|72
3J9W|1|BA|A|73
3J9W|1|BA|U|74
3J9W|1|BA|G|75
3J9W|1|BA|C|76
*
3J9W|1|BA|G|109
3J9W|1|BA|A|110
3J9W|1|BA|U|111
3J9W|1|BA|U|112
3J9W|1|BA|U|113

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein uL29

Chain B6

50S ribosomal protein bL34

Chain BW

50S ribosomal protein uL23