J3_3J9Y_030

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Y_030 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0694

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3J9Y|1|A|G|1424
3J9Y|1|A|G|1425
3J9Y|1|A|G|1426
3J9Y|1|A|A|1427
3J9Y|1|A|C|1428
3J9Y|1|A|G|1429
*
3J9Y|1|A|C|1564
3J9Y|1|A|C|1565
*
3J9Y|1|A|G|1568
3J9Y|1|A|A|1569
3J9Y|1|A|A|1570
3J9Y|1|A|A|1571
3J9Y|1|A|A|1572
3J9Y|1|A|G|1573
3J9Y|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2