J3_3J9Y_035

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

3J9Y|1|a|U|1212, 3J9Y|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Y_035 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1437

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

3J9Y|1|a|C|990
3J9Y|1|a|U|991
3J9Y|1|a|U|992
3J9Y|1|a|G|993
3J9Y|1|a|A|994
3J9Y|1|a|C|995
3J9Y|1|a|A|996
3J9Y|1|a|U|997
*
3J9Y|1|a|A|1044
3J9Y|1|a|C|1045
3J9Y|1|a|A|1046
3J9Y|1|a|G|1047
*
3J9Y|1|a|C|1210
3J9Y|1|a|U|1211
3J9Y|1|a|U|1212
3J9Y|1|a|A|1213
3J9Y|1|a|C|1214
3J9Y|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14

Chain w

Tetracycline resistance protein TetM