J3_3J9Z_005

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Z_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.2847

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

3J9Z|1|LA|G|1055
3J9Z|1|LA|G|1056
3J9Z|1|LA|A|1057
*
3J9Z|1|LA|U|1081
3J9Z|1|LA|U|1082
3J9Z|1|LA|U|1083
3J9Z|1|LA|A|1084
3J9Z|1|LA|A|1085
3J9Z|1|LA|A|1086
3J9Z|1|LA|G|1087
*
3J9Z|1|LA|C|1102
3J9Z|1|LA|A|1103
3J9Z|1|LA|C|1104

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L36

Chain LD

50S ribosomal protein L10

Chain LE

50S ribosomal protein L11