J3_3J9Z_008

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

3J9Z|1|LA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Z_008 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.526

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

3J9Z|1|LA|U|1344
3J9Z|1|LA|C|1345
3J9Z|1|LA|G|1346
3J9Z|1|LA|A|1347
3J9Z|1|LA|C|1348
3J9Z|1|LA|C|1349
3J9Z|1|LA|C|1350
*
3J9Z|1|LA|G|1381
3J9Z|1|LA|G|1382
3J9Z|1|LA|A|1383
3J9Z|1|LA|A|1384
3J9Z|1|LA|A|1385
*
3J9Z|1|LA|U|1402
3J9Z|1|LA|A|1403

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LR

50S ribosomal protein L23