J3_3J9Z_013

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

3J9Z|1|LA|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Z_013 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.1789

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

3J9Z|1|LA|G|2812
3J9Z|1|LA|A|2813
3J9Z|1|LA|A|2814
3J9Z|1|LA|C|2815
*
3J9Z|1|LA|G|2831
3J9Z|1|LA|U|2832
3J9Z|1|LA|U|2833
3J9Z|1|LA|G|2834
3J9Z|1|LA|A|2835
3J9Z|1|LA|U|2836
*
3J9Z|1|LA|A|2882
3J9Z|1|LA|A|2883
3J9Z|1|LA|U|2884
3J9Z|1|LA|G|2885
3J9Z|1|LA|A|2886
3J9Z|1|LA|A|2887
3J9Z|1|LA|C|2888

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L32

Chain LJ

50S ribosomal protein L17

Chain LQ

50S ribosomal protein L22

Chain LX

50S ribosomal protein L3