J3_3J9Z_028

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

3J9Z|1|LA|A|504, 3J9Z|1|LA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Z_028 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.1683

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J9Z|1|LA|G|30
3J9Z|1|LA|C|31
*
3J9Z|1|LA|G|474
3J9Z|1|LA|C|475
3J9Z|1|LA|G|476
3J9Z|1|LA|A|477
3J9Z|1|LA|A|478
3J9Z|1|LA|A|479
3J9Z|1|LA|A|480
3J9Z|1|LA|G|481
3J9Z|1|LA|A|482
3J9Z|1|LA|A|483
3J9Z|1|LA|C|484
*
3J9Z|1|LA|G|496
3J9Z|1|LA|A|497
3J9Z|1|LA|G|498
3J9Z|1|LA|U|499
3J9Z|1|LA|G|500
3J9Z|1|LA|A|501
3J9Z|1|LA|A|502
3J9Z|1|LA|A|503
3J9Z|1|LA|A|504
3J9Z|1|LA|A|505
3J9Z|1|LA|G|506
3J9Z|1|LA|A|507
3J9Z|1|LA|A|508
3J9Z|1|LA|C|509
3J9Z|1|LA|C|510

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LO

50S ribosomal protein L20

Chain LQ

50S ribosomal protein L22

Chain LS

50S ribosomal protein L24