J3_3JA1_007

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

3JA1|1|LA|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JA1_007 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.2021

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

3JA1|1|LA|C|1306
3JA1|1|LA|A|1307
3JA1|1|LA|A|1308
3JA1|1|LA|G|1309
*
3JA1|1|LA|C|1605
3JA1|1|LA|C|1606
3JA1|1|LA|C|1607
3JA1|1|LA|A|1608
3JA1|1|LA|A|1609
3JA1|1|LA|A|1610
3JA1|1|LA|C|1611
*
3JA1|1|LA|G|1620
3JA1|1|LA|U|1621
3JA1|1|LA|G|1622

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34