J3_3JA1_008

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JA1_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1425

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

3JA1|1|LA|C|2091
3JA1|1|LA|U|2092
3JA1|1|LA|G|2093
*
3JA1|1|LA|C|2196
3JA1|1|LA|U|2197
3JA1|1|LA|A|2198
3JA1|1|LA|A|2199
3JA1|1|LA|C|2200
*
3JA1|1|LA|G|2223
3JA1|1|LA|G|2224
3JA1|1|LA|A|2225
3JA1|1|LA|C|2226
3JA1|1|LA|A|2227
3JA1|1|LA|G|2228

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LD

50S ribosomal protein L2

Chain LI

50S ribosomal protein L9

Chain LZ

50S ribosomal protein L28