3D structure

PDB id
3JA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
3JA1|1|SA|A|975, 3JA1|1|SA|G|976, 3JA1|1|SA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JA1_020 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.1927
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

3JA1|1|SA|U|955
3JA1|1|SA|U|956
3JA1|1|SA|U|957
3JA1|1|SA|A|958
3JA1|1|SA|A|959
3JA1|1|SA|U|960
3JA1|1|SA|U|961
3JA1|1|SA|C|962
*
3JA1|1|SA|G|973
3JA1|1|SA|A|974
3JA1|1|SA|A|975
3JA1|1|SA|G|976
3JA1|1|SA|A|977
3JA1|1|SA|A|978
3JA1|1|SA|C|979
3JA1|1|SA|C|980
3JA1|1|SA|U|981
3JA1|1|SA|U|982
3JA1|1|SA|A|983
3JA1|1|SA|C|984
*
3JA1|1|SA|G|1221
3JA1|1|SA|G|1222
3JA1|1|SA|C|1223
3JA1|1|SA|U|1224
3JA1|1|SA|A|1225

Current chains

Chain SA
16S ribosomal RNA

Nearby chains

Chain S3
Elongation factor G
Chain SJ
30S ribosomal protein S10
Chain SM
30S ribosomal protein S13
Chain SN
30S ribosomal protein S14
Chain SS
30S ribosomal protein S19

Coloring options:


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