J3_3JA1_027

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

3JA1|1|LA|A|504, 3JA1|1|LA|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JA1_027 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.1446

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3JA1|1|LA|G|30
3JA1|1|LA|C|31
*
3JA1|1|LA|G|474
3JA1|1|LA|C|475
3JA1|1|LA|G|476
3JA1|1|LA|A|477
3JA1|1|LA|A|478
3JA1|1|LA|A|479
3JA1|1|LA|A|480
3JA1|1|LA|G|481
3JA1|1|LA|A|482
3JA1|1|LA|A|483
3JA1|1|LA|C|484
*
3JA1|1|LA|G|496
3JA1|1|LA|A|497
3JA1|1|LA|G|498
3JA1|1|LA|U|499
3JA1|1|LA|G|500
3JA1|1|LA|A|501
3JA1|1|LA|A|502
3JA1|1|LA|A|503
3JA1|1|LA|A|504
3JA1|1|LA|A|505
3JA1|1|LA|G|506
3JA1|1|LA|A|507
3JA1|1|LA|A|508
3JA1|1|LA|C|509
3JA1|1|LA|C|510

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LS

50S ribosomal protein L20

Chain LU

50S ribosomal protein L22

Chain LW

50S ribosomal protein L24