J3_3JA1_028
3D structure
- PDB id
- 3JA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 3JA1|1|LA|U|34, 3JA1|1|LA|U|448, 3JA1|1|LA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JA1_028 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.3765
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JA1|1|LA|C|32
3JA1|1|LA|C|33
3JA1|1|LA|U|34
3JA1|1|LA|G|35
*
3JA1|1|LA|C|445
3JA1|1|LA|G|446
3JA1|1|LA|A|447
3JA1|1|LA|U|448
3JA1|1|LA|A|449
3JA1|1|LA|G|450
3JA1|1|LA|U|451
3JA1|1|LA|G|452
3JA1|1|LA|A|453
3JA1|1|LA|A|454
3JA1|1|LA|C|455
3JA1|1|LA|C|456
3JA1|1|LA|A|457
3JA1|1|LA|G|458
3JA1|1|LA|U|459
3JA1|1|LA|A|460
3JA1|1|LA|C|461
*
3JA1|1|LA|G|468
3JA1|1|LA|G|469
3JA1|1|LA|A|470
3JA1|1|LA|A|471
3JA1|1|LA|A|472
3JA1|1|LA|G|473
Current chains
- Chain LA
- 23S ribosomal RNA
Nearby chains
- Chain L5
- 50S ribosomal protein L34
- Chain LF
- 50S ribosomal protein L4
- Chain LS
- 50S ribosomal protein L20
- Chain LV
- 50S ribosomal protein L23
Coloring options: