J3_3JA1_029

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

3JA1|1|LA|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JA1_029 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.1876

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

3JA1|1|LA|G|297
3JA1|1|LA|G|298
3JA1|1|LA|A|299
3JA1|1|LA|A|300
3JA1|1|LA|G|301
*
3JA1|1|LA|C|316
3JA1|1|LA|G|317
3JA1|1|LA|C|318
3JA1|1|LA|G|319
3JA1|1|LA|A|320
3JA1|1|LA|U|321
3JA1|1|LA|A|322
3JA1|1|LA|C|323
3JA1|1|LA|A|324
3JA1|1|LA|G|325
*
3JA1|1|LA|C|337
3JA1|1|LA|G|338
3JA1|1|LA|U|339
3JA1|1|LA|A|340
3JA1|1|LA|C|341

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LF

50S ribosomal protein L4

Chain LW

50S ribosomal protein L24