J3_3JA1_030

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JA1_030 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.5989

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

3JA1|1|LA|U|1344
3JA1|1|LA|C|1345
3JA1|1|LA|G|1346
3JA1|1|LA|A|1347
3JA1|1|LA|C|1348
3JA1|1|LA|C|1349
3JA1|1|LA|C|1350
*
3JA1|1|LA|G|1381
3JA1|1|LA|G|1382
3JA1|1|LA|A|1383
3JA1|1|LA|A|1384
3JA1|1|LA|A|1385
*
3JA1|1|LA|U|1402
3JA1|1|LA|A|1403

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LV

50S ribosomal protein L23