J3_3JAH_007

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

3JAH|1|5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAH_007 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.084

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

3JAH|1|5|C|2393
3JAH|1|5|G|2394
3JAH|1|5|A|2395
3JAH|1|5|A|2396
3JAH|1|5|G|2397
3JAH|1|5|U|2398
3JAH|1|5|G|2399
*
3JAH|1|5|C|2805
3JAH|1|5|A|2806
3JAH|1|5|A|2807
*
3JAH|1|5|U|2819
3JAH|1|5|C|2820
3JAH|1|5|U|2821
3JAH|1|5|G|2822

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain g

eL34