J3_3JAI_024

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAI_024 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1165

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JAI|1|9|C|1218
3JAI|1|9|C|1219
3JAI|1|9|A|1220
3JAI|1|9|G|1221
*
3JAI|1|9|C|1645
3JAI|1|9|C|1646
3JAI|1|9|A|1647
3JAI|1|9|G|1648
3JAI|1|9|U|1649
3JAI|1|9|A|1650
3JAI|1|9|A|1651
*
3JAI|1|9|U|1673
3JAI|1|9|G|1674
3JAI|1|9|A|1675
3JAI|1|9|U|1676
3JAI|1|9|U|1677
3JAI|1|9|A|1678
3JAI|1|9|A|1679
3JAI|1|9|G|1680

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain FF

uS7

Chain QQ

uS9

Chain RR

eS17

Chain cc

eS28