J3_3JAI_027

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

3JAI|1|9|G|1507, 3JAI|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAI_027 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1635

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

3JAI|1|9|C|1272
3JAI|1|9|C|1273
3JAI|1|9|G|1274
3JAI|1|9|G|1275
3JAI|1|9|A|1276
3JAI|1|9|C|1277
*
3JAI|1|9|G|1320
3JAI|1|9|G|1321
3JAI|1|9|G|1322
3JAI|1|9|U|1323
3JAI|1|9|G|1324
*
3JAI|1|9|U|1504
3JAI|1|9|U|1505
3JAI|1|9|A|1506
3JAI|1|9|G|1507
3JAI|1|9|A|1508
3JAI|1|9|U|1509
3JAI|1|9|G|1510

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

eS10

Chain dd

uS14

Chain ff

eS31

Chain ii

eRF1