Motif J3_23728.1 Version J3_23728.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 4-7 | 5-6 | 9-12 | 10-11 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8C3A_041 | 8C3A | 0.0000 | 3 | CM | SSU rRNA | C | 1200 | C | 1201 | G | 1203 | A | 1204 | C | 1205 | * | G | 1248 | G | 1249 | G | 1250 | U | 1251 | G | 1252 | * | U | 1428 | U | 1429 | A | 1430 | A | 1432 | G | 1434 | cWW | tWH | tHS | cWW | cWw | cWW |
| 2 | J3_8P9A_079 | 8P9A | 0.1445 | 3 | sR | SSU rRNA | C | 1215 | C | 1216 | G | 1218 | A | 1219 | C | 1220 | * | G | 1263 | G | 1264 | G | 1265 | U | 1266 | G | 1267 | * | U | 1442 | U | 1443 | A | 1444 | A | 1446 | G | 1448 | cWW | tWH | tHS | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAGAC*GGGUG*UUAGACG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAGA*GGU*UAGAC | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Heat map statistics
- Min 0.14 | Avg 0.07 | Max 0.14
Coloring options: