J3_8C3A_041

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8C3A|1|CM|A|1202, 8C3A|1|CM|G|1431, 8C3A|1|CM|C|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8C3A|1|CM|C|1200
8C3A|1|CM|C|1201
8C3A|1|CM|A|1202
8C3A|1|CM|G|1203
8C3A|1|CM|A|1204
8C3A|1|CM|C|1205
*
8C3A|1|CM|G|1248
8C3A|1|CM|G|1249
8C3A|1|CM|G|1250
8C3A|1|CM|U|1251
8C3A|1|CM|G|1252
*
8C3A|1|CM|U|1428
8C3A|1|CM|U|1429
8C3A|1|CM|A|1430
8C3A|1|CM|G|1431
8C3A|1|CM|A|1432
8C3A|1|CM|C|1433
8C3A|1|CM|G|1434

Current chains

Chain CM

18S

Nearby chains

Chain CX

40S ribosomal protein S10-A

Chain DQ

40S ribosomal protein S29A

Chain DS

Ubiquitin-40S ribosomal protein S31 fusion protein