J3_3JAJ_002

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UC*GCCUAAGG*CG

Length

12 nucleotides

Bulged bases

3JAJ|1|4|C|169

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAJ_002 not in the Motif Atlas

Geometric match to J3_1MFQ_002

Geometric discrepancy: 0.2819

The information below is about J3_1MFQ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77820.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JAJ|1|4|U|128
3JAJ|1|4|C|129
*
3JAJ|1|4|G|168
3JAJ|1|4|C|169
3JAJ|1|4|C|170
3JAJ|1|4|U|171
3JAJ|1|4|A|172
3JAJ|1|4|A|173
3JAJ|1|4|G|174
3JAJ|1|4|G|175
*
3JAJ|1|4|C|221
3JAJ|1|4|G|222

Current chains

Chain 4

SRP 7S RNA

Nearby chains

Chain 6

SRP68