3D structure

PDB id
3JAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of 40S-eIF1A-eIF1 complex from yeast
Experimental method
ELECTRON MICROSCOPY
Resolution
3.46 Å

Loop

Sequence
UGA*UAAUAG*CAUUA
Length
14 nucleotides
Bulged bases
3JAM|1|2|U|863
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JAM_002 not in the Motif Atlas
Homologous match to J3_8C3A_034
Geometric discrepancy: 0.1622
The information below is about J3_8C3A_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.2
Basepair signature
cWW-tSH-cWW-tHW-cWW-cWW-F
Number of instances in this motif group
7

Unit IDs

3JAM|1|2|U|632
3JAM|1|2|G|633
3JAM|1|2|A|634
*
3JAM|1|2|U|860
3JAM|1|2|A|861
3JAM|1|2|A|862
3JAM|1|2|U|863
3JAM|1|2|A|864
3JAM|1|2|G|865
*
3JAM|1|2|C|961
3JAM|1|2|A|962
3JAM|1|2|U|963
3JAM|1|2|U|964
3JAM|1|2|A|965

Current chains

Chain 2
18S rRNA

Nearby chains

Chain H
eS7
Chain L
uS17
Chain N
uS15
Chain W
uS8
Chain X
uS12
Chain b
eS27

Coloring options:


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