Motif J3_17385.2 Version J3_17385.2 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8	break		9		10		11		12	1-12	2-3	2-4	2-11	3-10	4-11	5-6	8-9
1	J3_8P9A_072	8P9A	0.4493	2	sR	SSU rRNA	C	962	A	963	U	964	U	965	A	966	*	U	633	G	634	A	635	*	U	861	A	862	A	865	G	866	cWW	ncSH				cWW	cWW	cWW
2	J3_8C3A_034	8C3A	0.4812	2	CM	SSU rRNA	C	947	A	948	U	949	U	950	A	951	*	U	631	G	632	A	633	*	U	846	A	847	A	850	G	851	cWW			ntSW			cWW	cWW
3	J3_6CZR_077	6CZR	0.1595	1	1a	SSU rRNA	U	735	G	736	A	737	C	738	G	739	*	C	570	G	571	G	572	*	C	635	U	636	G	638	A	639	cWW				tHW	cWW	cWW	ncWW
4	J3_4LFB_015	4LFB	0.0877	1	A	SSU rRNA	U	751	G	752	A	753	C	754	G	755	*	C	586	G	587	G	588	*	C	651	U	652	G	654	A	655	cWW			tSH	tHW	cWW	cWW	cWW
5	J3_5J7L_051	5J7L	0.0000	1	AA	SSU rRNA	U	751	G	752	A	753	C	754	G	755	*	C	586	G	587	G	588	*	C	651	U	652	G	654	A	655	cWW		ncSH	tSH	tHW	cWW	cWW	cWW
6	J3_1KUQ_002	1KUQ	0.1080	1	B	16S RIBOSOMAL RNA FRAGMENT	U	50	G	51	A	52	C	53	G	54	*	C	4	G	5	G	6	*	C	15	U	16	G	18	A	19	cWW		ncSH	tSH	tHW	cWW	cWW	cWW
7	J3_1G1X_005	1G1X	0.1433	1	E+D	16S RIBOSOMAL RNA	U	751	G	752	A	753	C	754	G	755	*	C	586	G	587	G	588	*	C	651	U	652	G	654	A	655	cWW		ncSH	tSH	tHW	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGGCUAGAUGACG	4
UGAUAAUAGCAUUA	2
CGGCUUGAUGACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAGGAC	4
GAAUAAUU	2
GUUGGAC	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-tSH-cWW-tHW-cWW-cWW-F
Heat map statistics: Min 0.09 | Avg 0.27 | Max 0.53

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Coloring options: Nucleotide numbers

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