J3_3JAM_003

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAM_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.0901

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

3JAM|1|2|A|760
3JAM|1|2|G|761
3JAM|1|2|A|762
3JAM|1|2|G|763
*
3JAM|1|2|C|773
3JAM|1|2|A|774
3JAM|1|2|G|775
*
3JAM|1|2|U|784
3JAM|1|2|C|785
3JAM|1|2|G|786
3JAM|1|2|A|787
3JAM|1|2|A|788
3JAM|1|2|U|789

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain Y

eS24