J3_3JAM_006

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAM_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1347

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JAM|1|2|C|1160
3JAM|1|2|C|1161
3JAM|1|2|A|1162
3JAM|1|2|G|1163
*
3JAM|1|2|C|1579
3JAM|1|2|U|1580
3JAM|1|2|A|1581
3JAM|1|2|G|1582
3JAM|1|2|U|1583
3JAM|1|2|A|1584
3JAM|1|2|A|1585
*
3JAM|1|2|U|1607
3JAM|1|2|G|1608
3JAM|1|2|A|1609
3JAM|1|2|U|1610
3JAM|1|2|U|1611
3JAM|1|2|A|1612
3JAM|1|2|C|1613
3JAM|1|2|G|1614

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain c

eS28