J3_3JAM_009
3D structure
- PDB id
- 3JAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of 40S-eIF1A-eIF1 complex from yeast
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 3JAM|1|2|G|1443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAM_009 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1744
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3JAM|1|2|C|1214
3JAM|1|2|C|1215
3JAM|1|2|A|1216
3JAM|1|2|G|1217
3JAM|1|2|A|1218
3JAM|1|2|C|1219
*
3JAM|1|2|G|1262
3JAM|1|2|G|1263
3JAM|1|2|G|1264
3JAM|1|2|U|1265
3JAM|1|2|G|1266
*
3JAM|1|2|U|1440
3JAM|1|2|U|1441
3JAM|1|2|A|1442
3JAM|1|2|G|1443
3JAM|1|2|A|1444
3JAM|1|2|C|1445
3JAM|1|2|G|1446
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- eS10
- Chain M
- eS12
- Chain d
- uS14
- Chain f
- eS31
- Chain i
- eIF1A
Coloring options: