J3_3JAN_001

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CG*UGUAGU*AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAN_001 not in the Motif Atlas

Geometric match to J3_1E8O_001

Geometric discrepancy: 0.1568

The information below is about J3_1E8O_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11375.2

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

3

Unit IDs

3JAN|1|4|C|3
3JAN|1|4|G|4
*
3JAN|1|4|U|23
3JAN|1|4|G|24
3JAN|1|4|U|25
3JAN|1|4|A|26
3JAN|1|4|G|27
3JAN|1|4|U|28
*
3JAN|1|4|A|43
3JAN|1|4|G|44

Current chains

Chain 4

SRP 7S RNA

Nearby chains

Chain S1

SRP9

Chain S4

SRP14