J3_3JAN_007

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAN_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2938

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

3JAN|1|5|G|1969
3JAN|1|5|A|1970
3JAN|1|5|C|1971
*
3JAN|1|5|G|1995
3JAN|1|5|C|1996
3JAN|1|5|U|1997
3JAN|1|5|A|1998
3JAN|1|5|A|1999
3JAN|1|5|G|2000
3JAN|1|5|G|2001
*
3JAN|1|5|C|2016
3JAN|1|5|A|2017
3JAN|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein uL11

Chain q

Ribosomal protein uL10