J3_3JAP_002
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 3JAP|1|2|U|863
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAP_002 not in the Motif Atlas
- Homologous match to J3_8C3A_034
- Geometric discrepancy: 0.1889
- The information below is about J3_8C3A_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.2
- Basepair signature
- cWW-tSH-cWW-tHW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
3JAP|1|2|U|632
3JAP|1|2|G|633
3JAP|1|2|A|634
*
3JAP|1|2|U|860
3JAP|1|2|A|861
3JAP|1|2|A|862
3JAP|1|2|U|863
3JAP|1|2|A|864
3JAP|1|2|G|865
*
3JAP|1|2|C|961
3JAP|1|2|A|962
3JAP|1|2|U|963
3JAP|1|2|U|964
3JAP|1|2|A|965
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain H
- eS7
- Chain L
- uS17
- Chain N
- uS15
- Chain W
- uS8
- Chain X
- uS12
- Chain b
- eS27
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