J3_3JAQ_015
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 3JAQ|1|2|C|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAQ_015 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1623
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
3JAQ|1|2|A|880
3JAQ|1|2|U|881
3JAQ|1|2|C|882
3JAQ|1|2|A|883
*
3JAQ|1|2|U|927
3JAQ|1|2|A|928
3JAQ|1|2|A|929
3JAQ|1|2|C|930
3JAQ|1|2|U|931
3JAQ|1|2|A|932
3JAQ|1|2|C|933
3JAQ|1|2|U|934
3JAQ|1|2|G|935
*
3JAQ|1|2|C|942
3JAQ|1|2|A|943
3JAQ|1|2|U|944
3JAQ|1|2|U|945
3JAQ|1|2|U|946
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- eS1
- Chain N
- uS15
- Chain O
- uS11
- Chain a
- eS26
Coloring options: