J3_3JBN_008
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 3JBN|1|A|G|1300, 3JBN|1|A|G|1302, 3JBN|1|A|A|1304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBN_008 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.1772
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3JBN|1|A|C|1281
3JBN|1|A|U|1282
3JBN|1|A|U|1283
3JBN|1|A|A|1284
3JBN|1|A|A|1285
3JBN|1|A|U|1286
3JBN|1|A|U|1287
3JBN|1|A|U|1288
*
3JBN|1|A|G|1299
3JBN|1|A|G|1300
3JBN|1|A|G|1301
3JBN|1|A|G|1302
3JBN|1|A|A|1303
3JBN|1|A|A|1304
3JBN|1|A|A|1305
3JBN|1|A|C|1306
3JBN|1|A|U|1307
3JBN|1|A|C|1308
3JBN|1|A|A|1309
3JBN|1|A|C|1310
*
3JBN|1|A|G|1700
3JBN|1|A|G|1701
3JBN|1|A|C|1702
3JBN|1|A|U|1703
3JBN|1|A|G|1704
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain N
- 40S ribosomal protein uS10
- Chain O
- 40S ribosomal protein eS10
- Chain S
- 40S ribosomal protein uS13
- Chain T
- 40S ribosomal protein uS14
- Chain X
- 40S ribosomal protein uS19
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