J3_3JBN_016
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUGAAAUAG*CC*GU
- Length
- 13 nucleotides
- Bulged bases
- 3JBN|1|AA|U|383
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBN_016 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.1586
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
3JBN|1|AA|A|377
3JBN|1|AA|U|378
3JBN|1|AA|G|379
3JBN|1|AA|A|380
3JBN|1|AA|A|381
3JBN|1|AA|A|382
3JBN|1|AA|U|383
3JBN|1|AA|A|384
3JBN|1|AA|G|385
*
3JBN|1|AA|C|413
3JBN|1|AA|C|414
*
3JBN|1|AC|G|23
3JBN|1|AC|U|24
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein uL4
- Chain AW
- 60S ribosomal protein uL22
- Chain AZ
- 60S ribosomal protein uL24
- Chain Ae
- 60S ribosomal protein eL39
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