J3_3JBN_025
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CCGCUC*GGAAA*UG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBN_025 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.158
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
3JBN|1|AA|C|1675
3JBN|1|AA|C|1676
3JBN|1|AA|G|1677
3JBN|1|AA|C|1678
3JBN|1|AA|U|1679
3JBN|1|AA|C|1680
*
3JBN|1|AA|G|1734
3JBN|1|AA|G|1735
3JBN|1|AA|A|1736
3JBN|1|AA|A|1737
3JBN|1|AA|A|1738
*
3JBN|1|AA|U|1755
3JBN|1|AA|G|1756
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AY
- 60S ribosomal protein uL23
- Chain Aa
- 60S ribosomal protein eL34
- Chain Ad
- 60S ribosomal protein eL38
- Chain Ae
- 60S ribosomal protein eL39
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