J3_3JBN_030
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUUG*CUUAU*AGACAUA
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBN_030 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.3561
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JBN|1|AA|U|2725
3JBN|1|AA|U|2726
3JBN|1|AA|U|2727
3JBN|1|AA|G|2728
*
3JBN|1|AA|C|2821
3JBN|1|AA|U|2822
3JBN|1|AA|U|2823
3JBN|1|AA|A|2824
3JBN|1|AA|U|2825
*
3JBN|1|AA|A|2930
3JBN|1|AA|G|2931
3JBN|1|AA|A|2932
3JBN|1|AA|C|2933
3JBN|1|AA|A|2934
3JBN|1|AA|U|2935
3JBN|1|AA|A|2936
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein uL2
- Chain AJ
- 60S ribosomal protein eL8
- Chain AP
- 60S ribosomal protein eL15
- Chain Ab
- 60S ribosomal protein eL36
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