J3_3JBO_040
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CGAUAGCAAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 3JBO|1|AA|U|351, 3JBO|1|AA|A|359, 3JBO|1|AC|U|27
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBO_040 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.1157
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JBO|1|AA|C|348
3JBO|1|AA|G|349
3JBO|1|AA|A|350
3JBO|1|AA|U|351
3JBO|1|AA|A|352
3JBO|1|AA|G|353
3JBO|1|AA|C|354
3JBO|1|AA|A|355
3JBO|1|AA|A|356
3JBO|1|AA|A|357
3JBO|1|AA|C|358
3JBO|1|AA|A|359
3JBO|1|AA|A|360
3JBO|1|AA|G|361
3JBO|1|AA|U|362
3JBO|1|AA|A|363
3JBO|1|AA|C|364
*
3JBO|1|AA|G|371
3JBO|1|AA|G|372
3JBO|1|AA|A|373
3JBO|1|AA|A|374
3JBO|1|AA|A|375
3JBO|1|AA|G|376
*
3JBO|1|AC|C|25
3JBO|1|AC|U|26
3JBO|1|AC|U|27
3JBO|1|AC|G|28
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein uL4
- Chain AZ
- 60S ribosomal protein uL24
- Chain Ac
- 60S ribosomal protein eL37
- Chain Ae
- 60S ribosomal protein eL39
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