J3_3JBO_044

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUACA*UC*GAAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JBO_044 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1173

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

3JBO|1|AA|U|1809
3JBO|1|AA|U|1810
3JBO|1|AA|A|1811
3JBO|1|AA|C|1812
3JBO|1|AA|A|1813
*
3JBO|1|AA|U|2013
3JBO|1|AA|C|2014
*
3JBO|1|AA|G|2018
3JBO|1|AA|A|2019
3JBO|1|AA|A|2020
3JBO|1|AA|A|2021
3JBO|1|AA|A|2022
3JBO|1|AA|A|2023

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain Aa

60S ribosomal protein eL34

Chain Ah

60S ribosomal protein eL43