J3_3JBP_006
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CCAG*CUAGUAA*UAACUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBP_006 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.1596
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JBP|1|A|C|1262
3JBP|1|A|C|1263
3JBP|1|A|A|1264
3JBP|1|A|G|1265
*
3JBP|1|A|C|1878
3JBP|1|A|U|1879
3JBP|1|A|A|1880
3JBP|1|A|G|1881
3JBP|1|A|U|1882
3JBP|1|A|A|1883
3JBP|1|A|A|1884
*
3JBP|1|A|U|1906
3JBP|1|A|A|1907
3JBP|1|A|A|1908
3JBP|1|A|C|1909
3JBP|1|A|U|1910
3JBP|1|A|A|1911
3JBP|1|A|C|1912
3JBP|1|A|G|1913
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 5
- 40S ribosomal protein eS28
- Chain I
- 40S ribosomal protein uS7
- Chain M
- 40S ribosomal protein uS9
Coloring options: