J3_3JBP_010
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- UUUUAG*CGAGAUC*GGCAACA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBP_010 not in the Motif Atlas
- Geometric match to J3_5J7L_008
- Geometric discrepancy: 0.3038
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
3JBP|1|A|U|1384
3JBP|1|A|U|1385
3JBP|1|A|U|1386
3JBP|1|A|U|1387
3JBP|1|A|A|1388
3JBP|1|A|G|1389
*
3JBP|1|A|C|1429
3JBP|1|A|G|1430
3JBP|1|A|A|1431
3JBP|1|A|G|1432
3JBP|1|A|A|1433
3JBP|1|A|U|1434
3JBP|1|A|C|1435
*
3JBP|1|A|G|1664
3JBP|1|A|G|1665
3JBP|1|A|C|1666
3JBP|1|A|A|1667
3JBP|1|A|A|1668
3JBP|1|A|C|1669
3JBP|1|A|A|1670
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein uS3
- Chain G
- 40S ribosomal protein uS5
- Chain M
- 40S ribosomal protein uS9
- Chain N
- 40S ribosomal protein uS10
- Chain T
- 40S ribosomal protein uS14
- Chain W
- 40S ribosomal protein eS17
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