J3_3JBP_030
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- UUUG*CUUAU*AGACAUA
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBP_030 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.3442
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JBP|1|AA|U|2725
3JBP|1|AA|U|2726
3JBP|1|AA|U|2727
3JBP|1|AA|G|2728
*
3JBP|1|AA|C|2821
3JBP|1|AA|U|2822
3JBP|1|AA|U|2823
3JBP|1|AA|A|2824
3JBP|1|AA|U|2825
*
3JBP|1|AA|A|2930
3JBP|1|AA|G|2931
3JBP|1|AA|A|2932
3JBP|1|AA|C|2933
3JBP|1|AA|A|2934
3JBP|1|AA|U|2935
3JBP|1|AA|A|2936
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein uL2
- Chain AJ
- 60S ribosomal protein eL8
- Chain AP
- 60S ribosomal protein eL15
- Chain Ab
- 60S ribosomal protein eL36
Coloring options: