J3_3JBP_031
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CUC*GAC*GAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 3JBP|1|AA|A|3042, 3JBP|1|AA|A|3044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBP_031 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1252
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3JBP|1|AA|C|3003
3JBP|1|AA|U|3004
3JBP|1|AA|C|3005
*
3JBP|1|AA|G|3029
3JBP|1|AA|A|3030
3JBP|1|AA|C|3031
*
3JBP|1|AA|G|3040
3JBP|1|AA|A|3041
3JBP|1|AA|A|3042
3JBP|1|AA|A|3043
3JBP|1|AA|A|3044
3JBP|1|AA|G|3045
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AG
- 60S ribosomal protein uL5
- Chain AR
- 60S ribosomal protein uL18
- Chain AV
- 60S ribosomal protein eL21
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