J3_3JBP_038
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- AAC*GAACAU*AGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 3JBP|1|A|U|1659, 3JBP|1|A|U|1660
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBP_038 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.2259
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3JBP|1|A|A|1438
3JBP|1|A|A|1439
3JBP|1|A|C|1440
*
3JBP|1|A|G|1632
3JBP|1|A|A|1633
3JBP|1|A|A|1634
3JBP|1|A|C|1635
3JBP|1|A|A|1636
3JBP|1|A|U|1637
*
3JBP|1|A|A|1653
3JBP|1|A|G|1654
3JBP|1|A|G|1655
3JBP|1|A|A|1656
3JBP|1|A|A|1657
3JBP|1|A|G|1658
3JBP|1|A|U|1659
3JBP|1|A|U|1660
3JBP|1|A|U|1661
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 5
- 40S ribosomal protein eS28
- Chain I
- 40S ribosomal protein uS7
- Chain M
- 40S ribosomal protein uS9
- Chain N
- 40S ribosomal protein uS10
- Chain T
- 40S ribosomal protein uS14
- Chain W
- 40S ribosomal protein eS17
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