J3_3JBP_040
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CGAUAGCAAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 3JBP|1|AA|U|351, 3JBP|1|AA|A|359, 3JBP|1|AC|U|27
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBP_040 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.1086
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
3JBP|1|AA|C|348
3JBP|1|AA|G|349
3JBP|1|AA|A|350
3JBP|1|AA|U|351
3JBP|1|AA|A|352
3JBP|1|AA|G|353
3JBP|1|AA|C|354
3JBP|1|AA|A|355
3JBP|1|AA|A|356
3JBP|1|AA|A|357
3JBP|1|AA|C|358
3JBP|1|AA|A|359
3JBP|1|AA|A|360
3JBP|1|AA|G|361
3JBP|1|AA|U|362
3JBP|1|AA|A|363
3JBP|1|AA|C|364
*
3JBP|1|AA|G|371
3JBP|1|AA|G|372
3JBP|1|AA|A|373
3JBP|1|AA|A|374
3JBP|1|AA|A|375
3JBP|1|AA|G|376
*
3JBP|1|AC|C|25
3JBP|1|AC|U|26
3JBP|1|AC|U|27
3JBP|1|AC|G|28
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein uL4
- Chain AZ
- 60S ribosomal protein uL24
- Chain Ac
- 60S ribosomal protein eL37
- Chain Ae
- 60S ribosomal protein eL39
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