J3_3JBP_043

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UUACA*UC*GAAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JBP_043 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1183

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3JBP|1|AA|U|1809
3JBP|1|AA|U|1810
3JBP|1|AA|A|1811
3JBP|1|AA|C|1812
3JBP|1|AA|A|1813
*
3JBP|1|AA|U|2013
3JBP|1|AA|C|2014
*
3JBP|1|AA|G|2018
3JBP|1|AA|A|2019
3JBP|1|AA|A|2020
3JBP|1|AA|A|2021
3JBP|1|AA|A|2022
3JBP|1|AA|A|2023

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain Aa

60S ribosomal protein eL34

Chain Ah

60S ribosomal protein eL43