J3_3JBU_023
3D structure
- PDB id
- 3JBU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 3JBU|1|b|U|2833, 3JBU|1|b|U|2884, 3JBU|1|b|G|2885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBU_023 not in the Motif Atlas
- Geometric match to J3_5J7L_048
- Geometric discrepancy: 0.3227
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
3JBU|1|b|G|2812
3JBU|1|b|A|2813
3JBU|1|b|A|2814
3JBU|1|b|C|2815
*
3JBU|1|b|G|2831
3JBU|1|b|U|2832
3JBU|1|b|U|2833
3JBU|1|b|G|2834
3JBU|1|b|A|2835
3JBU|1|b|U|2836
*
3JBU|1|b|A|2882
3JBU|1|b|A|2883
3JBU|1|b|U|2884
3JBU|1|b|G|2885
3JBU|1|b|A|2886
3JBU|1|b|A|2887
3JBU|1|b|C|2888
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L3
- Chain n
- 50S ribosomal protein L17
Coloring options: