J3_3JBV_007

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

3JBV|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JBV_007 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2019

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

3JBV|1|A|C|990
3JBV|1|A|U|991
3JBV|1|A|U|992
3JBV|1|A|G|993
*
3JBV|1|A|C|1045
3JBV|1|A|A|1046
3JBV|1|A|G|1047
*
3JBV|1|A|C|1210
3JBV|1|A|U|1211
3JBV|1|A|U|1212
3JBV|1|A|A|1213
3JBV|1|A|C|1214
3JBV|1|A|G|1215

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain N

30S ribosomal protein S14