J3_3JBV_008
3D structure
- PDB id
- 3JBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.32 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBV_008 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1269
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
3JBV|1|A|C|1063
3JBV|1|A|G|1064
3JBV|1|A|U|1065
3JBV|1|A|C|1066
3JBV|1|A|A|1067
3JBV|1|A|G|1068
*
3JBV|1|A|C|1107
3JBV|1|A|G|1108
3JBV|1|A|C|1109
3JBV|1|A|A|1110
3JBV|1|A|A|1111
3JBV|1|A|C|1112
3JBV|1|A|C|1113
*
3JBV|1|A|G|1187
3JBV|1|A|A|1188
3JBV|1|A|U|1189
3JBV|1|A|G|1190
3JBV|1|A|A|1191
3JBV|1|A|C|1192
3JBV|1|A|G|1193
Current chains
- Chain A
- RNA (1530-MER)
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain C
- 30S ribosomal protein S3
- Chain E
- 30S ribosomal protein S5
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
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