J3_3JBV_021
3D structure
- PDB id
- 3JBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.32 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 3JBV|1|b|U|2833, 3JBV|1|b|U|2884, 3JBV|1|b|G|2885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBV_021 not in the Motif Atlas
- Geometric match to J3_5J7L_048
- Geometric discrepancy: 0.3064
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
3JBV|1|b|G|2812
3JBV|1|b|A|2813
3JBV|1|b|A|2814
3JBV|1|b|C|2815
*
3JBV|1|b|G|2831
3JBV|1|b|U|2832
3JBV|1|b|U|2833
3JBV|1|b|G|2834
3JBV|1|b|A|2835
3JBV|1|b|U|2836
*
3JBV|1|b|A|2882
3JBV|1|b|A|2883
3JBV|1|b|U|2884
3JBV|1|b|G|2885
3JBV|1|b|A|2886
3JBV|1|b|A|2887
3JBV|1|b|C|2888
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L11
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
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