J3_3JCD_006

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

3JCD|1|A|A|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCD_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1712

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3JCD|1|A|C|1298
3JCD|1|A|G|1299
3JCD|1|A|G|1300
3JCD|1|A|A|1301
3JCD|1|A|A|1302
3JCD|1|A|G|1303
*
3JCD|1|A|C|1625
3JCD|1|A|A|1626
3JCD|1|A|G|1627
*
3JCD|1|A|C|1639
3JCD|1|A|A|1640
3JCD|1|A|A|1641
3JCD|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains