Motif J3_32852.6 Version J3_32852.6 of this group appears in releases 3.91 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 4-7 | 4-10 | 4-11 | 5-6 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7A0S_006 | 7A0S | 0.1008 | 1 | X | LSU rRNA | C | 1311 | G | 1312 | U | 1313 | A | 1314 | G | 1316 | * | C | 1641 | G | 1642 | A | 1643 | * | U | 1656 | A | 1657 | A | 1658 | G | 1659 | cWW | tSH | tSs | ntHW | cWW | cWW | ||
| 2 | J3_9DFE_010 | 9DFE | 0.0000 | 1 | 1A | LSU rRNA | C | 1298 | G | 1299 | U | 1300 | A | 1301 | G | 1303 | * | C | 1625 | G | 1626 | G | 1627 | * | U | 1639 | C | 1640 | A | 1641 | G | 1642 | cWW | tSH | tSs | ntHW | cWW | cWW | ||
| 3 | J3_4WF9_004 | 4WF9 | 0.1592 | 1 | X | LSU rRNA | C | 1335 | G | 1336 | A | 1337 | U | 1338 | G | 1340 | * | C | 1669 | A | 1670 | A | 1671 | * | U | 1683 | A | 1684 | A | 1685 | G | 1686 | cWW | tSH | ntHH | tWW | cWW | cWW | ||
| 4 | J3_5J7L_041 | 5J7L | 0.2164 | 1 | DA | LSU rRNA | C | 1298 | G | 1299 | G | 1300 | A | 1301 | G | 1303 | * | C | 1625 | A | 1626 | G | 1627 | * | C | 1639 | A | 1640 | A | 1641 | G | 1642 | cWW | tSH | ntHW | cWW | cWW | |||
| 5 | J3_4V9F_005 | 4V9F | 0.5982 | 2 | 0 | LSU rRNA | C | 1404 | U | 1405 | A | 1406 | A | 1407 | G | 1409 | * | C | 1700 | A | 1701 | G | 1703 | * | C | 1715 | A | 1716 | A | 1717 | G | 1718 | cWW | tWH | tWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAG*CGA*UAAG | 1 |
| CGUAAG*CGG*UCAG | 1 |
| CGAUUG*CAA*UAAG | 1 |
| CGGAAG*CAG*CAAG | 1 |
| CUAAUG*CAUG*CAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*G*AA | 1 |
| GUAA*G*CA | 1 |
| GAUU*A*AA | 1 |
| GGAA*A*AA | 1 |
| UAAU*AU*AA | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Heat map statistics
- Min 0.10 | Avg 0.27 | Max 0.60
Coloring options: