3D structure

PDB id
3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
3JCD|1|a|U|1240, 3JCD|1|a|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JCD_026 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1933
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

3JCD|1|a|C|1237
3JCD|1|a|A|1238
3JCD|1|a|A|1239
3JCD|1|a|U|1240
3JCD|1|a|G|1241
*
3JCD|1|a|C|1296
3JCD|1|a|G|1297
3JCD|1|a|U|1298
3JCD|1|a|A|1299
3JCD|1|a|G|1300
3JCD|1|a|U|1301
3JCD|1|a|C|1302
3JCD|1|a|C|1303
*
3JCD|1|a|G|1334
3JCD|1|a|U|1335
3JCD|1|a|C|1336
3JCD|1|a|G|1337

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain m
30S ribosomal protein S13

Coloring options:


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